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The IAI activities plan for 2011-2012 focuses on renewing its training and scientific programs, including the launch of a new series of Training Institutes and the potential establishment of a Centre of Excellence on water security. Key initiatives include a MacArthur Foundation-funded project on biodiversity in the Tropical Andes and a renewed internship agreement with INPE/CPTEC. The document also notes a need for greater operational stability within the IAI Directorate to manage increasing workloads.

The IAI's 2007-2008 annual plan focuses on launching the SGP-HD human dimensions program, expanding the CRN II network through ocean and climate projects, and developing a new Strategic Plan. Key planned activities include a proposal to evaluate climate change impacts on Andean biodiversity, a training institute on multi-use rivers in semi-arid regions of Brazil, and a summer school on land-use reaction strategies in Latin America.

The IAI activities plan for 2016-2017 focuses on institutional transitions in Argentina and Brazil, the continuation and expansion of CRN3 research projects with an emphasis on interdisciplinary science and ecosystem services, and the delivery of professional development seminars across the Americas. Key science-policy goals include launching a MOOC at COP-22, participating in UNCBD COP-13 and IPBES-5, and aligning research with the UN Sustainable Development Goals.